Hagihara, Y., Okuzaki, Y., Matsubayashi, K., Kaneoka, H., Suzuki, T., Iijima,
S., & Nishijima, K. I. Primordial germ cell‐specific expression of
eGFP in transgenic chickens. genesis 58: e23388, 2020
Taira Y, Ikuta Y, Inamori S, Nunome M, Nakano M, Suzuki T, Matsuda Y, Tsudzuki M, Teramoto M, Iida H, Kondoh H. The formation of multiple pituitary pouches from the oral ectoderm causes ectopic lens development in hedgehog signaling-defective avian embryos. Developmental Dynamics, 2020
Kinoshita K, Suzuki T, Koike M, Nishida C, Koike A, Nunome M, Uemura T, Ichiyanagi K, Matsuda Y. Combined deletions of IHH and NHEJ1 cause chondrodystrophy and embryonic lethality in the Creeper chicken. Communications Biology 3:144, 2020.
2019
Nunome M, Kinoshita K, Ishishita S, Ohmori Y, Murai A, Matsuda Y. Genetic diversity of 21 experimental chicken lines with diverse origins and genetic backgrounds. Experimental Animals 68: 177-193, 2019.
2018
Ishishita S, Takahashi M, Yamaguchi K, Kinoshita K, Nakano M, Nunome M, Kitahara S, Tatsumoto S, Go Y, Shigenobu S, Matsuda Y. Nonsense mutation in PMEL is associated with yellowish plumage colour phenotype in Japanese quail. Scientific Reports 8: 16732, 2018.
Shinomiya A, Yoshimura T. Seasonal regulation of reproduction in vertebrates: special focus on avian strategy. In: Reproductive and Developmental Strategies. Kobayashi K, Kitano T, Iwao Y, Kondo M eds., Springer Japan (2018).
Nakayama T, Yoshimura T. Seasonal rhythms: the role of thyrotropin and thyroid hormones. Thyroid 28: 4-10, 2018.
Uchida Y, Kanehira K, Takemae N, Hikono H, Saito T. Susceptibility of chickens, quail, and pigeons to an H7N9 human influenza virus and subsequent egg-passaged strains. Archives of Virology 162: 103-116, 2017.
Seki R, Li C, Fang Q, Hayashi S, Egawa S, Hu J, Xu L, Pan H, Kondo M, Sato T, Matsubara H, Kamiyama N, Kitajima K, Saito D, Liu Y, Gilbert MT, Zhou Q, Xu X, Shiroishi T, Irie N, Tamura K, Zhang G. Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features. Nature Communications 8:14229 doi: 10.1038/ncomms14229, 2017.
Tamai TK, Yoshimura T. Molecular and neuroendocrine mechanisms of avian seasonal reproduction. In: Avian Reproduction. Sasanami T ed., Springer, 2017.
Nunome M, Nakano M, Tadano R, Kawahara-Miki R, Kono T, Takahashi S, Kawashima T, Fujiwara A, Nirasawa K, Mizutani M, Matsuda Y. Genetic divergence in domestic Japanese quail inferred from mitochondrial DNA D-loop and microsatellite markers. PLoS ONE 12(1): e0169978. doi:10.1371/journal.pone.0169978, 2017.
Machida Y, Murata S, Matsuyama-Kato A, Isezaki M, Taneno A, Sakai E, Konnai S, Ohashi K. Isolation and purification of Gallid herpesvirus 2 strains currently distributed in Japan. Journal of Veterinary Medical Science. 79: 115-122, 2017.
Ikegami K, Yoshimura T. Molecular mechanism regulating seasonality. In: Biological Timekeeping: Clocks, Rhythms and Behaviour. Kumar V ed., Springer, 2017.
2016
Matsubara Y*, Nakano M*, Kawamura K, Tsudzuki M, Funahashi J, Agata K, Matsuda Y, Kuroiwa A, Suzuki T. Inactivation of sonic hedgehog signaling and polydactyly in limbs of Hereditary Multiple Malformation, a novel type of Talpid mutant. Frontiers in Cell and Developmental Biology 4: 149. doi: 10.3389/fcell.2016.00149. (*co-first author). 2016.
Ishishita S, Matsuda Y. Interspecific hybrids of dwarf hamsters and Phasianidae birds as animal models for studying the genetic and developmental basis of hybrid incompatibility. Genes & Genetic Systems 91:63-75 (Invited review paper for special issue), 2016.
Kinoshita K, Shimogiri T, Ibrahim HR, Tsudzuki M, Maeda Y, Matsuda Y. Identification of TENP as the gene encoding chicken egg white ovoglobulin G2 and demonstration of its high genetic variability in chickens. PLoS ONE, 11: e0159571. doi:10.1371/journal.pone.0159571, 2016.
Kinoshita K , Myint SL, Shimogiri T, Ibrahim HR, Kawabe K, Okamoto S, Lee Y, Matsuda Y, Maeda Y. Chicken ovotransferrin variants OTFB and OTFC harboring substitution of GAT (Asp) to AAT (Asn) in the codon 500 and their antimicrobial activity.The Journal of Poultry Science, 53: 257-263, 2016.
Ishishita S, Kinoshita K, Nakano M, Matsuda Y. Embryonic development and inviability phenotype of chicken-Japanese quail F1 hybrids. Scientific Reports, 6:26369, 2016.
Kidani S, Okuzaki Y, Kaneoka H, Asai S, Murakami S, Murase Y, Iijima S, Nishijima KI. Expression of interferon-inducible transmembrane proteins in the chicken and possible role in prevention of viral infections. Cytotechnology, DOI: 10.1007/s10616-016-9958-1, 2016.
Murai A, Kitahara K, Okumura S, Kobayashi M, Horio F. Oral antibiotics enhance antibody responses to keyhole limpet hemocyanin in orally but not muscularly immunized chickens. Animal Science Journal87: 257-265, 2016.
Seki R, Kitajima K, Matsubara H, Suzuki T, Saito D, Yokoyama H, Tamura K. AP-2β is a transcriptional regulator for determination of digit length in tetrapods. Developmental Biology407: 75-89, 2015.
Matsuzaki M, Mizushima S, Hiyama G, Hirohashi N, Shiba K, Inaba K, Suzuki T, Dohra H, Ohnishi T, Sato Y, Kohsaka T, Ichikawa Y, Atsumi Y, Yoshimura T, Sasanami T. Lactic acid is a sperm motility inactivation factor in the sperm storage tubules. Scientific Reports 5: 17643, 2015.
Shimmura T, Ohashi S, Yoshimura T.The highest-ranking rooster has priority to announce the break of dawn. Scientific Reports 5: 11683, 2015.
Shibuya K, Kinoshita K, Mizutani M, Oshima A, Yamashita R, Matsuda Y. Intraocular Ossification in the GSP/pe Chicken With Imperfect Albinism. Veterinary Pathology 52(4):688-691, 2015.
Sasanami T, Izumi S, Sakurai N, Hirata T, Mizushima S, Matsuzaki M, Hiyama G, Yorinaga E, Yoshimura T, Ukena K, Tsutsui K. A unique mechanism of successful fertilization in a domestic bird. Scientific Reports 5: 7700, 2015.
Ikegami K, Atsumi Y, Yorinaga E, Ono H, Murayama I, Nakane Y, Ota W, Arai N, Tega A, Iigo M, Darras VM, Tsutsui K, Hayashi Y, Yoshida S, Yoshimura T. Low temperature-induced circulating triiodothyronine accelerates seasonal testicular regression. Endocrinology 156: 647-659, 2015.
Morishita Y, Kuroiwa A, Suzuki T. Quantitative analysis of tissue deformation dynamics reveals three characteristic growth modes and globally aligned anisotropic tissue deformation during chick limb development. Development pii: dev.109728, 2015.
Murai A, Kitahara K, Okumura S, Kobayashi M, Horio F. Oral antibiotics enhance antibody responses to keyhole limpet hemocyanin in orally but not muscularly immunized chickens. Animal Science Journal 87(2):257-265, 2015.
Hiyama G, Matsuzaki M, Mizushima S, Dohra H, Ikegami K, Yoshimura T, Shiba K, Inaba K, Sasanami T. Sperm activation by heat shock protein 70 supports the migration of sperm released from sperm storage tubules in Japanese quail (Coturnix japonica). Reproduction 147: 167-178, 2014.
Ishijima J, Uno Y, Nishida C, Matsuda Y. Genomic structures of the kW1 loci on the Z and W chromosomes in ratite birds: structural changes at an early stage of W chromosome differentiation. Cytogenetic and Genome Research 142: 255-267, 2014.
Ishishita S, Tsuruta Y, Uno Y, Nakamura A, Nishida C, Griffin DK, Tsudzuki M, Ono T, Matsuda Y. Chromosome size-correlated and chromosome size-uncorrelated homogenization of centromeric repetitive sequences in New World quails. Chromosome Research 22: 15-34, 2014. (invited paper in the special issue “Avian Genomics”)
Oyanagi M, Kaneko K, Kaneko Y, Sasaki M, Nishida C, Matsuda Y, Mitsui T. Proteomic analysis of Nipponia nippon (ID#162). Animal Science Journal 85: 814-832, 2014.
Kawagoshi T, Uno Y, Nishida C, Matsuda Y. The Staurotypus turtles and Aves have the same origin of sex chromosomes but evolved different types of XY and ZW heterogametic sex determination. PLoS One 9 (8): e105315, 2014.
Morishita Y. and Suzuki T. Bayesian inference of whole-organ deformation dynamics from limited space-time point data. Journal of Theoretical Biology 357, 74-85, 2014.
Huynen L, Suzuki T, Ogura T, Watanabe Y, Millar CD, Hofreiter M, Smith C, Mirmoeini S, Lambert DM. Reconstruction and in vivo analysis of the extinct tbx5 gene from ancient wingless moa (Aves: Dinornithiformes). BMC Evolutionary Biology 14, doi:10.1186, 2014.
Goto T, Ishikawa A, Yoshida M, Goto N, Umino T, Nishibori M, Tsudzuki M. Quantitative trait loci mapping for egg external traits in F2 chickens. The Journal of Poultry Science 51(2): 118-129, 2014.
Goto T, Ishikawa A, Goto N, Nishibori M, Umino T, Tsudzuki M. Mapping of main-effect and epistatic quantitative trait loci for internal egg traits in an F2 resource population of chickens. The Journal of Poultry Science 51(4): 375-386, 2014.
Shibuya K, Kinoshita K, Mizutani M, Oshima A, Yamashita R, Matsuda Y. Intraocular ossification in the GSP/pe chicken with imperfect albinism. Veterinary Pathology pii: 0300985814559401, 2014.
Romanov MN, Farre M, Lithgow PE, Fowler KE, Skinner BM, O’Connor R, Fonseka G, Backstrom N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, Griffin DK. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. BMC Genomics 15(1): 1060, 2014.
Nishida C, Ishishita S, Yamada K, Griffin DK, Matsuda Y. Dynamic chromosomal reorganization in the osprey (Pandion haliaetus, Pandionidae, Falconiformes): the relationship between chromosome size and chromosomal distribution of centromeric repetitive DNA sequences. Cytogenet and Genome Research 142: 179-189, 2014.
Tadano R, Nunome M, Mizutani M, Kawahara-Miki R, Fujiwara A, Takahashi S, Kawashima T, Nirasawa K, Ono T, Kono T, Matsuda Y. Cost-effective development of highly polymorphic microsatellite in Japanese quail facilitated by next-generation sequencing. Animal Genetics 45: 881-884, 2014.
Kojima Y, Wakita J, Kaneoka H, Nishijima K, Iijima S. Galactosylation of erythropoietin produced by a transgenic chicken expressing galactosyltransferase. Journal of Bioscience and Bioengineering 117: 676-679, 2014.
Islam FB, Uno Y, Nunome M, Nishimura O, Tarui H, Agata K, Matsuda Y. Comparison of the chromosome structures between the chicken and three anserid species, the domestic duck (Anas platyrhynchos), Muscovy duck (Cairina moschata), and Chinese goose (Anser cygnoides), and the delineation of their karyotype evolution by comparative chromosome mapping. The Journal of Poultry Science 51: 1-13, 2014.
Kinoshita K, Akiyama T, Mizutani M, Shinomiya A, Ishikawa A, Younis HH, Tsudzuki M, Namikawa T and Matsuda Y. Endothelin receptor B2 (EDNRB2) is responsible for the tyrosinase-independent recessive white (mow) and mottled (mo) plumage phenotypes in the chicken. PLoS ONE 9(1), e86361, 2014.
Tadano R, Kinoshita K, Mizutani M, Tsudzuki M. Comparison of microsatellite variations between Red Junglefowl and a commercial chicken gene pool. Poultry Science 93: 318-3256, 2014.
Shinomiya A, Shimmura T, Nishiwaki-Ohkawa T, Yoshimura T. Regulation of seasonal reproduction by hypothalamic activation of thyroid hormone. Frontiers in Endocrinology 5: 12, 2014.
Nakane Y, Yoshimura T. Universality and diversity in the signal transduction pathway that regulates seasonal reproduction in vertebrates. Frontiers in Neuroscience 8: 115, 2014.
Yoshimura T. The origin and evolution of deep brain photoreceptor and seasonal time measurement. Gordon Research Conference on Pineal Cell Biology Galveston, TX. 2014.
Yoshimura T. Understanding the mechanisms of vertebrate seasonal reproduction. International Joint Symposium, Nagoya University, University of Adelaide, University of Freiburg, Nagoya University. 2014.
Yoshimura T. Evolution and origin of seasonal sensor in vertebrates. 7th Intercongress Symposium of the Asia and Oceania Society for Comparative Endocrinology (AOSCE), Keelung, Taiwan. 2014.
Yoshida K, Okuzaki Y, Nishijima K, Kyogoku K, Yamashita T, Kawabe Y, Motono M, Kamihira M, Iijima S. Recombinant proteins produced into yolk of genetically manipulated chickens are partly sislylated in N-glycan. Cytotechnology 65: 985-992, 2013.
Islam FB, Ishishita S, Uno Y, Mollah MBR, Srikulnath K, Matsuda Y. Male hybrid sterility in the mule duck is associated with meiotic arrest of primary spermatocytes. The Journal of Poultry Science 50: 311320, 2013.
Nishida C, Ishijima J, Ishishita S, Yamada K, Yamazaki T, Matsuda Y. Karyotype reorganization with conserved genomic compartmentalization in dot-shaped microchromosomes in the Japanese mountain hawk-Eagle (Nisaetus nipalensis orientalis, Accipitridae). Cytogenetics and Genome Research 141: 284294, 2013.
Yoshida M, Ishikawa A, Goto T, Goto N, Nishibori M, Tsudzuki M. QTL mapping for meat color traits using the F2 intercross between the Oh-Shamo (Japanese Large Game) and White Leghorn
chickens. The Journal of Poultry Science 50: 198-205, 2013.
Suzuki S, Hosomichi K, Yokoyama K, Tsuda K, Hara H, Yoshida Y, Fujiwara A, Mizutani M, Shiina T, Kono T, Hanzawa K. Primary analysis of DNA polymorphisms in the TRIM region (MHC subregion) of the Japanese quail, Coturnix japonica. Animal Science Journal 84: 90-96, 2013.
Hiyama G, Matsuzaki M, Mizushima S, Dohra H, Ikegami K, Yoshimura T, Shiba K, Inaba K, Sasanami T. Sperm activation by heat shock protein 70 supports the migration of sperm released from sperm storage tubules in Japanese quail (Coturnix japonica). Reproduction 147: 167-1786, 2013.
Kawahara-Miki R, Sano S, Nunome M, Shimmura T, Kuwayama T, Takahashi S, Kawashima T, Matsuda Y, Yoshimura T, Kono T. Next-generation sequencing reveals genomic features in the Japanese quail. Genomics 101: 345-353, 2013.
Kato A, Miyahara D, Kagami H, Atsumi Y, Mizushima S, Shimada K, Ono T. Culture system for bobwhite quail embryos from the blastoderm stage to hatching. Journal of Poultly Science 50, 155-158, 2013.
Shimmura T, Yoshimura T. Circadian clock determines the timing of rooster crowing. Current Biology 23: R231-R233, 2013.
Murai A, Murota R, Doi K, Yoshida T, Aoyama H, Kobayashi M, Horio F. Avian IgY is selectively incorporated into the egg yolks of oocytes by discriminating Fc amino acid residues located on the Cυ3/Cυ4 interface. Developmental and Comparative Immunology 39: 378-387, 2013.
Yamada K, Jin W, Ohkura T, Murai A, Hayakawa R, Kinoshita K, Mizutani M, Okamoto A, Namikawa T, Ohta M. Detection of Methicillin-resistant Staphylococcus aureus using specific anti-PBP2a chicken IgY antibody. Japanese Journal of Infectious Diseases 66: 103-108, 2013.
Jin W, Yamada K, Ikami M, Kaji N, Tokeshi M, Atsumi Y, Mizutani M, Murai A, Okamoto A, Namikawa T, Baba Y, Ohta M. Application of IgY to sandwich enzyme-linked immunosorbent assays, lateral flow devices, and immunopillar chips for detecting staphylococcal enterotoxins in milk and dairy products. Journal of Microbiological Methods 92: 323-331, 2013.
Takimoto T, Doi K, Kobayashi M, Horio F, Murai A. Amino acid substitution in the Cυ3 domain causes either elevation or reduction of IgY uptake into egg yolks of quail. Veterinay Immunology and Immunopathology 153: 289-297, 2013.
Yoshimura T. Photoperiodic time measurement in vertebrates. The 6th Asia and Oceania Conference on Photobiology. Sydney, Australia. 2013.
Yoshimura T. Molecular switches: genetic response cascades to photoperiod. Seasons of Life: Biological rhythms underlying healthy living. University of Glasgow. 2013.
Yoshimura T. Mechanism of seasonal reproduction in vertebrates: A comparative biology approach. UK Clock Club. University of Manchester. 2013.
Okino Y, Inayoshi Y, Kojima Y, Kidani S, Kaneoka H, Honkawa A, Higuchi H, Nishijima K, Miyake K, Iijima S. Moloney murine leukemia virus integrase and reverse transcriptase interact with PML proteins. Journal of Biochemistry 152(2): 161-169, 2012.
Uno Y, Nishida C, Tarui H, Ishishita S, Takagi C, Nishimura O, Ishijima J, Ota H, Kosaka A, Matsubara K, Murakami Y, Kuratani S, Ueno N, Agata K, Matsuda Y. Inference of the protokaryotypes of amniotes and tetrapods and the evolutionary processes of microchromosomes from comparative gene mapping. PLoS One 7: e53027, 2012.
Kodama D, Nishimiya D, Nishijima K, Okino Y, Inayoshi Y, Kojima Y, Ono K, Motono M, Miyake K, Kawabe Y, Kyogoku K, Yamashita T, Kamihira M, Iijima S. Chicken oviduct-specific expression of transgene by a hybrid ovalbumin enhancer and the Tet expression system. Journal of Bioscience and Bioengineering 113: 146-153, 2012.
Mizutani A, Tsunashima H, Nishijima K, Sasamoto T, Yamada Y, Kojima Y, Motono M, Kojima J, Inayoshi Y, Miyake K, Park E Y, Iijima S. Genetic modification of a chicken expression system for the galactosylation of therapeutic proteins produced in egg white. Transgenic Research 21: 63-75, 2012.
Myint S L, Shimogiri T, Kinoshita K, Nirasawa K, Saitoh N, Watanabe H, Kawabe K, Maeda Y, Okamoto S. Analysis of egg white lysozyme polymorphisms among Japanese quail populations in Japan and France. Journal of Poultry Science 49: 74-78, 2012.
Okino Y, Inayoshi Y, Kojima Y, Kidani S, Kaneoka H, Honkawa A, Higuchi H, Nishijima K, Miyake K, Iijima S. Moloney murine leukemia virus integrase and reverse transcriptase interact with PML proteins. Journal of Biochemistry 152(2), 161-169, 2012.
Shinomiya A, Kayashima Y, Kinoshita K, Mizutani M, Namikawa T, Matsuda Y, Akiyama T. Gene duplication of the endothelin 3 gene is closely correlated with the hyperpigmentation of the internal organs (Fibromelanosis) of Silky chickens. Genetics 190: 627-638, 2012.
Matsuda Y. The origin and evolutionary process of microchromosomes and chromosome size-dependent genomic compartmentalization in vertebrates. 7th International Chick Meeting. Nagoya, Japan. 2012.
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