研究業績 Publications

2005年

原著論文

  1. 1.Atsuo Sugano, Hidetaka Tsuchimoto, Cho Cho Tun, Susumu Asakawa and Makoto Kimura 2005: Succession and phylogenetic profile of eubacterial communities in rice straw incorporated into a rice field: estimation by PCR-DGGE analysis. Soil Sci. Plant Nutr., 51, 51-60

  2. 2.Jun Murase, Miho Shimizu, Motoki Hayashi, Kazuo Matsuya, and Makoto Kimura 2005: Vertical changes in bacterial communities in percolating water of a Japanese paddy field as revealed by PCR-DGGE. Soil Sci. Plant Nutr., 50, 83-90

  3. 3.Tomoko Hashimoto-Yasuda, Makoto Ikenaga, Susumu Asakawa, Han-Yong Kim, Masumi Okada, Kazuhiko Kobayashi, and Makoto Kimura 2005: Effect of free-air CO2 enrichment (FACE) on methanogenic archaeal communities inhabiting rice roots in a Japanese rice field. Soil Sci. Plant Nutr., 51(1), 91-100

  4. 4.Akira Watanabe, Hiromi Yamada, and Makoto Kimura 2005: Analysis of temperature effects on seasonal and interannual variation in CH4 emission from rice-planted pots. Agr. Ecosyst. Environ., 105(1-2), 439-443

  5. 5.Masatsugu Yamazaki, Masumi Okada, Kazuhiko Kobayashi, and Makoto Kimura 2005: Effect of free-air CO2 enrichment (FACE) on the community structure of aquatic organisms in the floodwater of a Japanese paddy field during the flooding period of rice cultivation. Soil Sci. Plant Nutr., 51(2), 271-279

  6. 6.Ainin Niswati, Jun Murase, and Makoto Kimura 2005: Comparison of bacterial communities associated with microcrustaceans from the floodwater of a paddy field microcosm: estimation based on DGGE pattern and sequence analyses. Soil Sci. Plant Nutr., 51, 281-290

  7. 7.Masahiko Katoh, Jun Murase, and Makoto Kimura 2005: Effect of rice straw amendment on dissolved organic and inorganic carbon and cationic nutrients in percolating water from a flooded paddy soil: A microcosm experiment using 13C-enriched rice straw. Org. Geochem., 36(5), 803-811

  8. 8.Takanori Tanahashi, Jun Murase, Kazuo Matsuya, Susumu Asakawa, and Makoto Kimura 2005: Bacterial community responsible for the decomposition of rice straw compost in a Japanese rice paddy field as determined with denaturing gradient gel electrophoresis of amplified 16S rDNA and 16S rRNA fragments. Soil Sci. Plant Nutr., 51(3), 351-360

  9. 9.Ainin Niswati, Jun Murase, and Makoto Kimura 2005: Effect of application of rice straw and compost on the bacterial communities associated with Moina sp. in the floodwater of a paddy soil microcosm: estimation based on DGGE pattern and sequence analyses. Soil Sci. Plant Nutr., 51(4), 565-571

  10. 10.Atsuo Sugano, Hidetaka Tsuchimoto, Cho Cho Tun, Makoto Kimura, and Susumu Asakawa 2005: Succession of methanogenic archaea in rice straw incorporated into a Japanese rice field: estimation by PCR-DGGE and sequence analyses. Archaea, 1(6), 391-397

  11. 11.Jun Murase and Atsuko Sugimoto 2005: Inhibitory effect of light on methane oxidation in the pelagic water column of a mesotrophic lake (Lake Biwa, Japan). Limnol. Oceanogr., 50, 1339-1343

  12. 12.Jun Murase, Yuji Sakai, Aya Kametani, and Astuko Sugimoto 2005: Dynamics of methane in a mesotrophic Lake Biwa, Japan. Ecol. Res., 20, 377-385


総説等

  1. 1.Makoto Kimura 2005: Populations, community composition and biomass of aquatic organisms in the floodwater of rice fields and effects of field management. Soil Sci. Plant Nutr., 51, 159-181

  2. 2.木村眞人・浅川晋 2005：世界の土壌と微生物，ペドロジスト，49(2)，90-98

  3. 3.早津雅人・須賀有子・浅川晋・高橋令二 2005：部門別進歩総説，第３部門　土壌生物，土壌生物，日本土壌肥料学雑誌，76（特集号），714-721

  4. 4.浅川晋 2005：土壌中の遺伝子・遺伝子情報・・・何ができるのか，何が分かるのか　６．土壌微生物の群集解析（その２）DGGE，水田土壌への適用，日本土壌 肥料学雑誌，76(6)，913-916


著書等

  1. 1.木村眞人 2005：水田における有機物の分解と炭素循環，木村眞人・波多野隆介編，土壌圏と地球温暖化，pp.139-165，名古屋大学出版会，名古屋  

  2. 2.三枝正彦・木村眞人 2005：土壌サイエンスとは，土壌サイエンス入門，三枝正彦・木村眞人編，pp.1-5，文永堂，東京

  3. 3.木村眞人 2005：土壌中の生物とその働き　１．土壌中の生物，土壌サイエンス入門，三枝正彦・木村眞人編，pp.149-158，文永堂，東京

  4. 4.浅川晋 2005：水田の土壌　２．水田における物質循環，土壌サイエンス入門，三枝正彦・木村眞人編，pp.74-84，文永堂，東京



2004年

原著論文

  1. 1.Yahai Lu, Akira Watanabe, and Makoto Kimura 2004: Contribution of plant photosynthates to dissolved organic carbon in a flooded rice soil. Biogeochemistry, 71, 1-15

  2. 2.Masatsugu Yamazaki, Yukihiro Hamada, Nobuchika Kamimoto, Takashi Momii and Makoto Kimura 2004: Habitats of aquatic organisms in a paddy field during flooding period. Edaphologia, 74, 1-10

  3. 3.Akira Watanabe, Nobuhisa Machida, Kazushi Takahashi, Shigeru Kitamura, and Makoto Kimura 2004: Flow of photosynthesized carbon from rice plants into the paddy soil ecosystem at different stages of rice growth. Plant Soil, 258, 151-160

  4. 4.Yahai Lu, Jun Murase, Akira Watanabe, Atsuko Sugimoto, and Makoto Kimura 2004: Linking microbial community dynamics to rhizosphere carbon flow in a wetland rice soil. FEMS Microbiol. Ecol., 48, 179-186

  5. 5.Nagamitsu Maie, Akira Watanabe, and Makoto Kimura 2004: Chemical characteristics and potential source of fulvic acids leached from the plow layer of paddy soil. Geoderma, 120, 309-323

  6. 6.Takeshi Watanbe, Susumu Asakawa, Asumi Nakamura, Kazunari Nagaoka and Makoto Kimura 2004: DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol. Lett., 232, 153-163

  7. 7.Masatsugu Yamazaki, Nobuhiro Yasuda, Toshimasa Yamada, Koich Ota, and Makoto Kimura 2004: Comparison of aquatic organisms communities between paddy fields under rice-duck (Aigamo) farming and paddy fields under conventional farming. Soil Sci. Plant Nutr., 50(3), 375-383

  8. 8.Ainin Niswati, Jun Murase, Susumu Asakawa, and Makoto Kimura 2004: Analysis of communities of ammonia oxidizers, methanotrophs, and methanogens associated with microcrustaceans in the floodwater of a rice field microcosm. Soil Sci. Plant Nutr., 50, 447-455

  9. 9.Vita Ratri Cahyani, Kazuo Matsuya, Susumu Asakawa and Makoto Kimura 2004: Succession and phylogenetic profile of methanogenic archaeal communities during the composting process of rice straw estimated by PCR-DGGE analysis. Soil Sci. Plant Nutr., 50, 555-563

  10. 10.Makoto Ikenaga, Susumu Asakawa, Yoshitetsu Muraoka and Makoto Kimura 2004: Community structure of Eukaryotes in rice roots estimated by PCR-DGGE pattern and sequence analyses. Soil Sci. Plant Nutr., 50, 583-589

  11. 11.Vita Ratri Cahyani, Kazuo Matsuya, Susumu Asakawa and Makoto Kimura 2004: Succession and phylogenetic profile of eukaryotic communities in the composting process of rice straw estimated by PCR-DGGE analysis. Biol. Fertil. Soils, 40, 334-344

  12. 12.Makoto Ikenaga, Susumu Asakawa, Yoshitetsu Muraoka and Makoto Kimura 2004: Methanogenic archaeal communities in rice roots grown in flooded soil pots: estimation by PCR-DGGE and sequence analyses. Soil Sci. Plant Nutr., 50, 701-711

  13. 13.Masatsugu Yamazaki, Yukihiro Hamada, Nobuchika Kamimoto, Takashi Momii, and Makoto Kimura 2004: Composition and structure of aquatic organisms communities in various water conditions of a paddy. Ecol. Res., 19, 645-653

  14. 14.Masahiko Kato, Jun Murase, Motoki Hayashi, Kazuo Matsuya, and Makoto Kimura 2004: Nutrient leaching from the plow layer by water percolation and accumulation in the subsoil in an irrigated paddy field. Soil Sci. Plant Nutr., 50, 721-729

  15. 15.Masahiko Kato, Jun Murase, and Makoto Kimura 2004: Sites and processes of nutrient accumulation in the subsoil through water percolation from the plow layer in a submerged paddy soil microcosm. Soil Sci. Plant Nutr., 50, 731-738

  16. 16.Takanori Tanahashi, Jun Murase, Kazuo Matsuya, Susumu Asakawa, and Makoto Kimura 2004: Microbial communities responsible for the decomposition of rice straw compost in a Japanese rice paddy field determined by phospholipid fatty acid (PLFA) analysis. Soil Sci. Plant Nutr., 50, 1229-1236


総説等

  1. 1.Makoto Kimura, Jun Murase, and Yahai Lu 2004: Carbon cycling in rice field ecosystems in the context of input, decomposition and translocation of organic materials and the fates of their end products (CO2 and CH4). Soil Biol. Biochem., 36, 1399-1416


著書等

  1. 1.浅川晋（分担執筆）：暖地水田におけるメタン生成菌の働き，九州・沖縄の農業と土壌肥料2004，日本土壌肥料学会九州支部編，pp.138 -141， 2004



2003年

原著論文

  1. 1.Masatsugu Yamazaki, Yukihiro Hamada, Nobutika Kamimoto, Takashi Momii, Yoshimi Aiba, Nobuhiro Yasuda, Shinya Mizuno, Shigekata Yoshida and Makoto Kimura 2003: Changes in the community structure of aquatic organisms after midseason drainage in the floodwater of Japanese paddy fields. Soil Sci. Plant Nutr, 49(1), 125-135

  2. 2.Ainin Niswati, Jun Murase and Makoto Kimura 2003: Effect of application of rice straw and compost on the community structure of bacteria associated with microcrustaceans in the floodwater of a paddy field microcosm. Soil Sci. Plant Nutr., 49(2), 191-200

  3. 3.Asumi Nakamura, Cho Cho Tun, Susumu Asakawa and Makoto Kimura 2003: Microbial community responsible for the decomposition of rice straw in a paddy field: estimation by phospholipid fatty acid analysis. Biol. Fertil. Soils, 38, 288-295

  4. 4.Makoto Ikenaga, Susumu Asakawa, Yoshitetsu Muraoka and Makoto Kimura 2003: Bacterial community associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE  and sequence analyses. Soil Sci. Plant Nutr., 49(4), 591-602

  5. 5.Vita Ratri Cahyani, Kazuo Matsuya, Susumu Asakawa and Makoto Kimura 2003: Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis. Soil Sci. Plant Nutr., 49(4), 619-630

  6. 6.Yahai Lu, Akira Watanabe and Makoto Kimura 2003: Carbon dynamics of rhizodeposits, root- and shoot-residues during the off-crop season of rice. Soil Biol. Biochem., 35, 1223-1230

  7. 7.Makoto Ikenaga, Susumu Asakawa, Yoshitetsu Muraoka and Makoto Kimura 2003: Phylogenetic study on CTO primer-amplified ammonia-oxidizing bacteria and ｧ-Proteobacteria associated with rice roots grown in a flooded paddy soil. Soil Sci. Plant Nutr., 49(5), 719-727

  8. 8.Masahiko Kato, Akiko Iwata , Ichiro Shaku, Yasunori Nakajima, Kazuo Matsuya  and Mokoto Kimura 2003: Impact of water percolation on nutrient leaching from an irrigated paddy field in Japan. Soil Use & Management, 19, 298-304

  9. 9.Susumu Asakawa and Kazunari Nagaoka 2003: Methanoculleus bourgensis, Methanoculleus olentangyi and Methanoculleus oldenburgensis are subjective synonyms. Int. J. Syst. Evol. Microbiol. 53, 1551-1552

  10. 10.Akira Hoshino, Hideo Sawada and Makoto Kimura 2003: Influence of Surface Coating Materials on the Degradability of Biodegradable Plastic Film in Soil. Soil Sci. Plant Nutr., 49(6), 903-907

  11. 11.Jun Murase, Kumiko Itoh, Mayuko Kano and Makoto Kimura 2003: Molecular analysis of ｧ-Proteobacterial ammonia oxidizer populations in surface layers of a submerged paddy soil micrososm. Soil Sci. Plant Nutr., 49(6), 909-913



2002年

原著論文

  1. 1.Nagamitsu Maie, Akira Watanabe, Kikuko Hayamizu and Makoto Kimura 2002: Comparison of chemical characteristics of Type A humic acids extracted from subsoils of paddy fields and surface ando soils. Geoderma, 106, 1-19 　

  2. 2.Masatsugu Yamazaki, Yukihiro Hamada, Nobutika Kamimoto, Takashi Momii and Makoto Kimura 2002:Effect of spring plowing on the spatial distribution of aquatic organisms in a paddy field during the off-crop season under drained conditions. Edaphologia, , 25-33

  3. 3.Ainin Niswati, Makoto Ikenaga and Makoto Kimura 2002: Microbiota associated with microcrustacean in the floodwater of a Japanese paddy field estimated by RFLP analysis. Soil Sci. Plant Nutr., 48(2), 185-193

  4. 4.Wayan Sabe Ardjasa, Ho Ando and Makoto Kimura 2002: Fate of basal N and growth of crops cultivated under cassava-based intercropping system with reference to K application rate. Soil Sci. Plant Nutr.,48(3), 365-370

  5. 5.Akira Hoshino, Masao Tsuji, Kazuhiko Fukuda, Miki Nonagase, Hideo Sawada and Makoto Kimura 2002: Changes in molecular structure of biodegradable plastics during degradation in soils estimated by FT-IR and NMR.Soil Sci. Plant Nutr., 48(4), 469-473

  6. 6.Miho Shimizu, Yasunori Nakajima, Kazuo Matsuya and Makoto Kimura 2002: Comparison of phospholipid fatty acid composition in percolating water, floodwater, and the plow layer soil during the rice cultivation period in a Japanese paddy field. Soil Sci. Plant Nutr., 48(4), 595-600

  7. 7.Makoto Kimura 2002: Community structure of fauna and microbiota in paddy field ecosystems. 17th World Congr. Soil Sci., No.1871: 1-11, August 14-21, Thailand

  8. 8.Yahai Lu, Akira Watanabe and Makoto Kimura 2002: Contribution of plant-derived carbon to soil microbial biomass dynamics in a paddy rice microcosm. Biol. Fertil. Soils, 36,136-142

  9. 9.Vita Ratri Cahyani, Akira Watanabe, Kazuo Matsuya, Susumu Asakawa and Makoto Kimura 2002: Succession of microbiota estimated by phospholipid fatty acid analysis and changes in organic constituents during the composting process of rice straw. Soil Sci. Plant Nutr., 48(5), 735-743

  10. 10.Makoto Kimura, Taketoshi Shibagaki, Yasunori Nakajima, Kazuo Matsuya, and Makoto Ikenaga 2002: Community structure of the microbiota in the floodwater of a Japanese paddy field estimated by restriction fragment length polymorphism and denaturing gradient gel electrophoresis pattern analyses. Biol. Fertil. Soils 36, 306-312

  11. 11.Makoto Ikenaga, Yoshitetsu Muraoka, Koki Toyota and Makoto Kimura 2002: Community structure of the microorganisms associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-RFLP analysis. Biol. Fertil.Soils, 36, 397-404

  12. 12.Yahai Lu, Akira Watanabe and Makoto Kimura 2002: Input and distribution of photosynthesized carbon in a flooded rice soil. Global Biogeochem. Cycles 16, 1085, doi:10.1029/2002GB001864

  13. 13.Cho Cho Tun, Makoto Ikenaga, Susumu Asakawa and Makoto Kimura 2002: Community structure of bacteria and fungi responsible for rice straw decomposition in a paddy field estimated by PCR-RFLPanalysis. Soil Sci. Plant Nutr., 48(6), 805-813

  14. 14.Yuji Sakai, Jun Murase, Atsuko Sugimoto, Kenji Okubo, and Eiichiro Nakayama 2002: Resuspension of bottom sediment by an internal wave in Lake Biwa. Lakes and Reservoirs 7, 339-344

  15. 15.Shigekazu Yamamuro, Hideto Ueno, Hiroshi Yamada,Yumiko Takahashi, Yoko Shiga, Syuko Miyahara, Tsutomu Shimonihara, Jun Murase, Junta Yanai, Mizuhiko Nishida 2002: Uptake of carbon and nitrogen through roots of rice and corn plants, grown in soils treated with 13C and 15N dual-labeled cattle manure compost. Soil Sci. Plant Nutr. 48(6), 787-795

  16. 16.Miho Shimizu, Motoki Hayashi, Kazuo Matsuya, Jun Murase and Makoto Kimura 2002: Comparison of microbial communities in percolating water from plow layer and subsoil layer estimated by phospholipid fatty acids (PLFA) analysis. Soil Sci. Plant Nutr., 48(6), 877-881



2001年

原著論文

  1. 1.Aiko Nakano, Kazushi Takahashi, Roger T. Koide and Makoto Kimura 2001: Determination of the nitrogen source for arbuscular mycorrhizal fungi by 15N application to soil and plants. Mycorrhiza, 10(6), 267-273

  2. 2.Aiko Nakano, Kazushi Takahashi and Makoto Kimura 2001: Effect of host shoot clipping on carbon and nitrogen sources for arbuscular mycorrhizal fungi. Mycorrhiza, 10(6), 287-293

  3. 3.Nagamitsu Maie, Akira Watanabe and Makoto Kimura 2001: Origin and properties of humus in the subsoil of irrigated rice paddies. IV. Effect of water percolation on the binding type of humus in a submerged plow layer soil. Soil Sci. Plant Nutr., 47(1), 1-8

  4. 4.Akira Hoshino, Hideo Sawada, Masahisa Yokota, Masao Tsuji, Kazuhiko Fukuda and Makoto Kimura 2001: Influence of weather conditions and soil properties on degradation of biodegradable plastics in soil. Soil Sci. Plant Nutr., 47(1), 35-43

  5. 5.Wayan Sabe Ardjasa, Ho Ando and Makoto Kimura 2001: Comparison of soil erosion among red-yellow podzolic fields under various cassava-based cropping patterns. Soil Sci. Plant Nutr., 47(1), 101-112

  6. 6.Guang-Hua Wang, Yasunori Nakajima, Ichiro Shaku and Makoto Kimura 2001: Effect of fungicide Thiram on microbial communities of rice seed surface estimated by culture-dependent and culture-independent (PCR-RFLP) methods. Soil Sci. Plant Nutr., 47(2), 303-314

  7. 7.Masatsugu Yamazaki, Yukihiro Hamada, Nobuchika Kamimoto, Takashi Momii and Makoto Kimura2001:Spatial distribution of aquatic organisms in a paddy field during off-crop season under drained conditions. Edaphologia, 68, 23-31

  8. 8.Makoto Kimura, Hiroyoshi Kishi, Akiko Okabe and Nagamitsu Maie 2001: Phospholipid fatty acid composition of microbiota in the percolating water from a rice paddy microcosm. Soil Sci. Plant Nutr.,47(3), 533-545

  9. 9.Makoto Kimura, Mariko Miyaki, Ko-Ichiro Fujinaka and Nagamitsu Maie 2001: Microbiota responsible for the decomposition of rice straw in a submerged paddy soil estimated from phospholipid fatty acid composition.Soil Sci. Plant Nutr., 47(3), 569-578

  10. 10.Masatsugu Yamazaki, Yukihiro Hamada, Takeo Ibuka, Takashi Momii and Makoto Kimura2001:Aquatic organisms in the floodwater of a Japanese paddy field under a long-term fertilizer trial. Soil Sci. Plant Nutr., 47(3), 587-599

  11. 11.Akira Watanaba, Hiromi Yamada and Makoto Kimura 2001: Effects of shifting growth stage and regulating temperature on seasonal variation of CH4 emission from rice. Global Biogeochem. Cycles, 15(3), 729-739

  12. 12.Abdul Kadir Salam, Afandi, Nanik Sriyani and Makoto Kimura 2001: Soil enzymatic activities in a hilly coffee Plantation in Lampung Province, South Sumatra Indonesia, managed by plant cover. Soil Sci. Plant Nutr., 47(4), 695-702

  13. 13.Dayeri Dianou, Taro Miyaki, Susumu Asakawa, Hiroyuki Morii, Kazunari Nagaoka, Hiroshi Oyaizu, and Satoshi Matsumoto 2001: Methanoculleus chikugoensis sp. nov., a novel methanogenic archaeon isolated from paddy field soil in Japan, and DNA-DNA hybridization among Methanoculleus species. Int. J. Syst. Evol. Microbiol., 51, 1663-1669

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