研究業績 Publications

2015年

原著論文 (Original article)

  1. 1.Jun Murase, Azusa Hida, Kaori Ogawa, Toshihiro Nonoyama, Nanako Yoshikawa, Katsuhiko Imai 2015: Impact of long-term fertilizer treatment on the microeukaryotic community structure of a rice field soil. Soil Biol. Biochem., 80, 237-243. (view abstract)

  2. 2.Dongyan Liu, Hiroki Ishikawa, Mizuhiko Nishida, Kazunari Tsuchiya, Tomoki Takahashi, Makoto Kimura, Susumu Asakawa 2015: Effect of paddy-upland rotation on methanogenic archaeal community structure in paddy field soil. Microb. Ecol., 69, 160-168. (view abstract)

  3. 3.Takashi Okubo, Dongyan Liu, Hirohito Tsurumaru, Seishi Ikeda, Susumu Asakawa, Takeshi Tokida, Kanako Tago, Masahito Hayatsu, Naohiro Aoki, Ken Ishimaru, Kazuhiro Ujiie, Yasuhiro Usui, Hirofumi Nakamura, Hidemitsu Sakai, Kentaro Hayashi, Toshihiro Hasegawa, Kiwamu Minamisawa 2015: Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria. Front. Microbiol., 6, 136. (view full text)

  4. 4.Kazunori Yokoe, Masahiro Maesaka, Jun Murase, Susumu Asakawa 2015: Solarization makes a great impact on the abundance and composition of microbial communities in soil. Soil Sci. Plant Nutr., 61, 641-652. (view abstract)

  5. 5.Rasit Asiloglu, Hiroki Honjo, Norikuni Saka, Susumu Asakawa, Jun Murase 2015: Community structure of microeukariotes in a rice rhizosphere revealed by DNA-based PCR-DGGE. Soil Sci. Plant Nutr., 61, 761-768. (view abstract)

  6. 6.Ashraf Khalifa, Chol Gyu Lee, Takuya Ogiso, Chihoko Ueno, Dayeri Dianou, Toyoko Demachi, Arata Katayama, Susumu Asakawa 2015: Methylomagnum ishizawai gen. nov., sp. nov., a mesophilic type I methanotroph isolated from rice rhizosphere. Int. J. Syst. Evol. Microbiol., 65, 3527-3534. (view abstract)

  7. 7.Jun Murase, Yoko Shinohara, Kazunori Yokoe, Risa Matsuda, Susumu Asakawa, Tomoyoshi Hashimoto 2015: Impact of soil solarization on the ciliate community structure of a greenhouse soil. Soil Sci. Plant Nutr., 61, 927-933. (view full text)


総説等 (Review article)

  1. 1.P. Smith, M.F. Cotrufo, C. Rumpel, K. Paustian, P.J. Kuikman, J.A. Elliott, R. McDowell, R.I. Griffiths, S. Asakawa, M. Bustamante, J.I. House, J. Sobock, R. Harper, G. Pan, P.C. West, J.S. Gerber, J.M. Clark, T. Adhya, R.J. Scholes, M.C. Scholes 2015: Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils. Soil, 1, 665-685. (view full text)


著書等 (Book)

  1. 1.浅川　晋（分担執筆）2015：田んぼの土づくりの主役は、酸素を利用しない嫌気性の微生物、「にぎやかな田んぼ　イナゴが跳ね、鳥は舞い、魚の泳ぐ小宇宙」、夏原由博編、p. 72-78、京都通信社、京都

  2. 2.村瀬　潤（分担執筆）2015：土壌酸化還元境界の微生物ダイナミズム、「土のひみつ ー食料・環境・生命ー」、白戸康人、豊田剛己、平館俊太郎、船川晋也、矢内純太（日本土壌肥料学会）編、p. 170-171、朝倉書店、東京


その他 (Others)

  1. 1.高階史章・西田瑞彦・浅川　晋 2015：第12回東・東南アジア土壌科学連合会議（12th ESAFS）報告. 日本土壌肥料学雑誌，86，600.





2014年

原著論文 (Original article)

  1. 1.Ryuko Baba, Makoto Kimura, Susumu Asakawa, Takeshi Watanabe 2014: Analysis of [FeFe]-hydrogenase genes for the elucidation of a hydrogen-producing bacterial community in paddy field soil. FEMS Microbiol. Lett., 350, 249-256. (view abstract)

  2. 2.Suresh Kumar Dubey, Alpana Singh, Takeshi Watanabe, Susumu Asakawa, Ankit Singla, Hironori Arai, Kazuyuki Inubushi 2014: Methane production potential and methanogenic archaeal community structure in tropical irrigated Indian paddy soils. Biol. Fertil. Soils, 50, 369-379. (view abstract)

  3. 3.Zhihua Bao, Aya Watanabe, Kazuhiro Sasaki, Takashi Okubo, Takeshi Tokida, Dongyan Liu, Seishi Ikeda, Haruko Imaizumi-Anraku, Susumu Asakawa, Tadashi Sato, Hisayuki Mitsui, Kiwamu Minamisawa 2014: A rice gene for microbial symbiosis, Oryza sativa CcaMK, reduces CH4 flux in a paddy field with low nitrogen input. Appl. Environ. Microbiol., 80, 1995-2003. (view abstract)

  4. 4.Seishi Ikeda, Kazuhiro Sasaki, Takashi Okubo, Akifumu Yamashita, Kimihiro Terasawa, Zhihua Bao, Dongyan Liu, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Shima Eda, Hisayuki Mitsui, Tadashi Sato, Kiwamu Minamisawa 2014: Low nitrogen fertilization adapts rice root microbiome to low nutrient Environment by changing biogeochemical functions. Microbes Envrion., 29, 50-59. (view full text)

  5. 5.Jun Murase, Yuriko Takenouchi, Kazufumi Iwasaki, Makoto Kimura 2014: Microeukaryotic community and oxygen response in rice field soil revealed using a combined rRNA-gene and rRNA-based approach. Microbes Environ., 29, 74-81. (view full text)

  6. 6.Masanori Kaneko, Yoshinori Takano, Yoshito Chikaraishi, Nanako O. Ogawa, Susumu Asakawa, Takeshi Watanabe, Seigo Shima, Martin Krüger, Makoto Matsushita, Hiroyuki Kimura, Naohiko Ohkouchi 2014: Quantitative analysis of coenzyme F430 in environmental samples: a new diagnostic tool for methanogenesis and anaerobic methane oxidation. Anal. Chem., 86, 3633-3638. (view abstract)

  7. 7.Yong Li, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Makoto Kimura 2014: Abundance and composition of ammonia oxidizers in response to degradation of root cap cells of rice in soil microcosms. J. Soils Sediments, 14, 1587-1598. (view abstract)

  8. 8.Kohei Yamashita, Hiroki Honjo, Mizuhiko Nishida, Makoto Kimura, Susumu Asakawa 2014: Estimation of microbial biomass potassium in paddy field soil. Soil Sci. Plant Nutr., 60, 512-519 (Corrigendum [2016] 62, 570-573). (view abstract)

  9. 9.Takuya Ogawa, Keisuke Isobe, Takeshi Mori, Susumu Asakawa, Tohru Yoshimura, Hisashi Hemmi 2014: A novel geranylgeranyl reductase from the methanogenic archaeon Methanosarcina acetivorans displays unique regiospecificity. FEBS J., 281, 3165-3176. (view abstract)


著書等 (Book)

  1. 1.村瀬　潤（分担執筆）2014：13 微生物を数える１ 培養法、 環境と微生物の事典、日本微生物生態学会編、p. 30-31、朝倉書店、東京

  2. 2.村瀬　潤（分担執筆）2014：21 微生物の群集と機能をつなぐ同位体、 環境と微生物の事典、日本微生物生態学会編、p. 47-48、朝倉書店、東京

  3. 3.村瀬　潤（分担執筆）2014：Column 微生物学研究のノーベル賞 レーウェンフック・メダル、 環境と微生物の事典、日本微生物生態学会編、p. 63、朝倉書店、東京

  4. 4.渡邉健史（分担執筆）2014：嫌気環境の微生物の共同作業、 環境と微生物の事典、日本微生物生態学会編、p. 91-92、朝倉書店、東京

  5. 5.浅川　晋（分担執筆）2014：逐次還元過程と微生物、 環境と微生物の事典、日本微生物生態学会編、p. 184-185、朝倉書店、東京





2013年

原著論文 (Original article)

  1. 1.Takeshi Watanabe, Yasukazu Hosen, Ruth Agbisit, Lizzida Llorca, Nobuko Katayanagi, Susumu Asakawa, Makoto Kimura 2013: Changes in community structure of methanogenic archaea brought about by water-saving practice in paddy field soil. Soil Biol. Biochem., 58, 235-243 (Corrigendum [2014] 79, 149). (view abstract)

  2. 2.Yong Li, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Makoto Kimura 2013: Identification of the major capsid gene (g23) of T4-type bacteriophages that assimilate substrates from root cap cells under aerobic and anaerobic soil conditions using a DNA-SIP approach. Soil Biol. Biochem., 63, 97-105. (view abstract)

  3. 3.Ryu Takahashi, Norikuni Saka, Hiroki Honjo, Susumu Asakawa, Makoto Kimura 2013: Comparison of the frequency of visibly infected bacterial cells between the soil and the floodwater in two Japanese rice fields. Soil Sci. Plant Nutr., 59, 331-336. (view abstract)

  4. 4.Takeshi Watanabe, Hiroaki Sumida, Nhut Minh Do, Katsuya Yano, Susumu Asakawa, Makoto Kimura 2013: Bacterial consortia in iron-deposited colonies formed on paddy soil surface under microaerobic conditions. Soil Sci. Plant Nutr., 59, 337-346. (view abstract)

  5. 5.Yong Li, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Makoto Kimura 2013: Growth of hydrogenotrophic and acetoclastic methanogens on substrate from rice plant callus cells in anaerobic soil: an estimation to the role of slough-off root cap cells to their growth. Soil Sci. Plant Nutr. 59, 548-558. (view abstract)

  6. 6.Takeshi Watanabe, Saman Bowatte, Paul C.D. Newton 2013: A reduced fraction of plant N derived from atmospheric N (%Ndfa) and reduced rhizobial nifH gene numbers indicate a lower capacity for nitrogen fixation in nodules of white clover exposed to long-term CO2 enrichment. Biogeosciences 10, 8269-8281. (view abstract)


総説等 (Review article)

  1. 1.村瀬　潤 2013：安定同位体プロービング法で探る水田土壌の炭素動態と微生物、土と微生物，67(1), 39-46.

  2. 2.浅川　晋・渡邉健史 2013：水田からのメタン発生とメタン生成古細菌、遺伝, 67(5), 579-585.

  3. 3.渡邉健史 2013：分子生態学的手法による水田土壌のメタン生成古細菌の動態と多様性に関する研究、 日本土壌肥料学雑誌，84(5), 355-356.


著書等 (Book)

  1. 1.村瀬　潤（分担執筆）2013：第10章 原生動物 10-2. 直接顕微鏡法による繊毛虫の計数、 土壌微生物実験法第3版、日本土壌微生物学会編、p. 82、養賢堂、東京

  2. 2.村瀬　潤（分担執筆）2013：第10章 原生動物 10-3. 有殻アメーバの計数、 土壌微生物実験法第3版、日本土壌微生物学会編、p. 82、養賢堂、東京

  3. 3.村瀬　潤（分担執筆）2013：第10章 原生動物 10-4. 裸アメーバ・べん毛虫の計数、 土壌微生物実験法第3版、日本土壌微生物学会編、p. 82、養賢堂、東京

  4. 4.村瀬　潤（分担執筆）2013：第10章 原生動物 10-5. アメーバ・べん毛虫の分離・同定、 土壌微生物実験法第3版、日本土壌微生物学会編、p. 82、養賢堂、東京

  5. 5.村瀬　潤（分担執筆）2013：第10章 原生動物 10-6. 実験に際しての注意点、 土壌微生物実験法第3版、日本土壌微生物学会編、p. 82、養賢堂、東京

  6. 6.村瀬　潤（分担執筆）2013：第16章 Stable Isotope Probing (SIP)、 土壌微生物実験法第3版、日本土壌微生物学会編、pp. 137-144、養賢堂、東京

  7. 7.渡邉健史・浅川　晋（分担執筆）2013： 第22章 メタン生成・酸化菌 22-1. メタン生成菌、 土壌微生物実験法第3版、日本土壌微生物学会編、pp. 262-268、養賢堂、東京

  8. 8.浅川　晋・ 渡邉健史（分担執筆）2013： 第22章 メタン生成・酸化菌 22-2. メタン酸化菌、 土壌微生物実験法第3版、日本土壌微生物学会編、pp. 268-273、養賢堂、東京





2012年

原著論文 (Original article)

  1. 1.Masatsugu Yamazaki, Susumu Asakawa, Jun Murase, Makoto Kimura 2012: Phylogenetic diversity of microturbellarians in Japanese rice paddy fields, with special attention to the genus Stenostomum. Soil Sci. Plant Nutr., 58, 11-23. (view abstract)

  2. 2.Jun Murase, Manami Shibata, Chol Gyu Lee, Takeshi Watanabe, Susumu Asakawa, Makoto Kimura 2012: Incorporation of plant residue-derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing. FEMS Microbiol. Ecol., 79, 371-379. (view abstract)

  3. 3.Chol Gyu Lee, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Makoto Kimura 2012: Growth of methanogens in an oxic soil microcosm: Elucidation by a DNA-SIP experiment using 13C-labeled dried rice callus. Appl. Soil Ecol., 58, 37-44. (view abstract)

  4. 4.Chol Gyu Lee, Takeshi Watanabe, Yuichi Fujita, Susumu Asakawa, Makoto Kimura 2012: Heterotrophic growth of cyanobacteria and phage-mediated microbial loop in soil: Examination by stable isotope probing (SIP) method. Soil Sci. Plant Nutr., 58, 161-168. (view abstract)

  5. 5.Yong Li, Takeshi Watanabe, Susumu Asakawa, Makoto Kimura 2012: Bacterial communities that decompose root cap cells in an anaerobic soil: estimation by DNA-SIP method using rice plant callus cells. Soil Sci. Plant Nutr., 58, 297-308. (view abstract)

  6. 6.Takuya Ogiso, Chihoko Ueno, Dayeri Dianou, Tran Van Huy, Arata Katayama, Makoto Kimura, Susumu Asakawa 2012: Methylomonas koyamae sp. nov., a type I methane-oxidizing bacterium from floodwater of a rice paddy field. Int. J. Syst. Evol. Microbiol., 62, 1832-1837. (view abstract)

  7. 7.Dayeri Dianou, Chihoko Ueno, Takuya Ogiso, Makoto Kimura, Susumu Asakawa 2012: Diversity of cultivable methane-oxidizing bacteria in microsites of a rice paddy field: investigation by cultivation method and fluorescence in situ hybridization (FISH). Microbes Environ., 27, 278-287. (view abstract)

  8. 8.Yong Wang, Kazunari Nagaoka, Masahito Hayatsu, Yoriko Sakai, Kanako Tago, Susumu Asakawa, Takeshi Fujii 2012: A novel method for RNA extraction from Andosols using casein and its application to amoA gene expression study in soil. Appl. Microbiol. Biotechnol., 96, 793-802. (view abstract)

  9. 9.Dongyan Liu, Chika Suekuni, Kazunori Akita, Toyoaki Ito, Masanori Saito, Takeshi Watanabe, Makoto Kimura, Susumu Asakawa 2012: Effect of winter-flooding on methanogenic archaeal community structure in paddy field under organic farming. Soil Sci. Plant Nutr., 58, 553-561. (view abstract)


総説等 (Review article)

  1. 1.村瀬潤 2012：北方湿地生態系からのメタン放出に及ぼす積雪の影響、低温科学，70, 131-136. (view abstract)





2011年

原著論文 (Original article)

  1. 1.Jun Murase, Kees Hordijk, Ichiro Tayasu, Paul L.E. Bodelier 2011: Strain-specific incorporation of methanotrophic biomass into eukaryotic grazers in a rice field soil revealed by PLFA-SIP. FEMS Microbiol. Ecol., 75, 284-290. (view abstract)

  2. 2.Chol Gyu Lee, Takeshi Watanabe, Yutaka Sato, Jun Murase, Susumu Asakawa, Makoto Kimura 2011: Bacterial populations assimilating carbon from 13C-labeled plant residue in soil: Analysis by a DNA-SIP approach. Soil Biol. Biochem., 43, 814-822. (view abstract)

  3. 3.Guanghua Wang, Zhenhua Yu, Junjie Liu, Jian Jin, Xiaobing Liu, Makoto Kimura 2011: Molecular analysis of the major capsid genes (g23) of T4-type bacteriophages in an upland black soil in Northeast China. Biol. Fertil. Soils, 47, 273-282. (view abstract)

  4. 4.Ryu Takahashi, Saman Bowatte, Katsutoshi Taki, Yoshinori Ohashi, Susumu Asakawa, Makoto Kimura 2011: High frequency of phage-infected bacterial cells in a rice field soil in Japan. Soil Sci. Plant Nutr., 57, 35-39. (view abstract)

  5. 5.Guanghua Wang, Susumu Asakawa, Makoto Kimura 2011: Spatial and temporal changes of cyanophage communities in paddy field soils as revealed by the capsid assembly protein gene g20, FEMS Microbiol. Ecol., 76, 352-359. (view abstract)

  6. 6.Takeshi Watanabe, Guanghua Wang, Jun Murase, Susumu Asakawa, Makoto Kimura 2011: Assimilation of glucose-derived carbon into methanogenic archaea in soil under unflooded condition. Appl. Soil Ecol., 48, 201-209. (view abstract)

  7. 7.Yong Li, Chol Gyu Lee, Takeshi Watanabe, Jun Murase, Susumu Asakawa, Makoto Kimura 2011: Identification of microbial communi-ties that assimilate substrate from root cap cells in an aerobic soil using a DNA-SIP approach. Soil Biol. Biochem., 43, 1928-1935. (view abstract)

  8. 8.Takeshi Watanabe, Chol Gyu Lee, Jun Murase, Susumu Asakawa, Makoto Kimura 2011: Carbon flow into ammonia-oxidizing bacteria and archaea during decomposition of 13C-labeled plant residues in soil. Soil Sci. Plant Nutr., 57, 775-785. (view abstract)

  9. 9.D. O. Sigunga, M. Hoshino, J. C. Onyango, S. Asanuma, M. Kimura 2011: Pedological perspective of gully erosion sites within Kendu escarpment-Sondu Miriu Region, West Kenya. Afr. J. Environ. Sci. Technol., 5, 1050-1059. (view abstract)


総説等 (Review article)

  1. 1.浅川　晋・長岡一成・関口博之・浦嶋泰文・須賀有子・西澤智康・太田寛之・山崎真嗣・妹尾啓史 2011：分子生態学的な微生物解析手法の土壌肥料研究への活用. 日本土壌肥料学雑誌，82(2), 160-165.

  2. 2.浅川　晋 2011：酸化還元研究の新展開 -土壌の酸化還元がもたらす現象を追う- 2. 水田の湛水・落水に伴う土壌微生物群集の変化 -分子生物学的手法による解析- . 日本土壌肥料学雑誌，82(5), 428-433.

  3. 3.村瀬　潤・鮫島玲子・小川直人・浅川晋 2011：部門別進歩総説，第３部門　土壌生物，土壌生物，日本土壌肥料学雑誌，82（6、部門別進歩総説特集号），486-494.

  4. 4.福田　直・東　照雄・木村眞人 2011：部門別進歩総説，第９部門　社会・文化土壌学. 日本土壌肥料学雑誌，82（6、部門別進歩総説特集号），586-590.


著書等 (Book)

  1. 1.村瀬　潤（分担執筆）2011：12. 窒素サイクル，メタンサイクルに果たす微生物の役割、 シリーズ　現代の生態学11巻、p. 186-205、共立出版，東京

  2. 2.Makoto Kimura, Susumu Asakawa 2011: Anaerobic microbially mediated processes. In "Handbook of Soil Sciences: Properties and Processes, Second Edition". P. M. Huang, Y. Li, M. E. Sumner (ed), pp. 26-32－26-41, CRC Press, Taylor & Francis Group, Boca Raton.

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