Publication

Selected Publication

  • Junfeng Chen, Kousuke Okimura, Liang Ren, Yusuke Nakane, Tomoya Nakayama, Yang Chen, Kai Fukawa, Soutarou Sugiyama, Takayoshi Natsume, Naoko Suda-Hashimoto, Mayumi Morimoto, Takako Miyabe-Nishiwaki, Takao Oishi, Yuma Katada, Manhui Zhang, Kohei Kobayashi, Shoko Matsumoto, Taiki Yamaguchi, Ying-Jey Guh, Issey Takahashi, Taeko Nishiwaki-Ohkawa, Daiki Sato, Yoshiharu Murata, Kenta Sumiyama, Atsushi J. Nagano, Hiroo Imai, Takashi Yoshimura. Non-human primate seasonal transcriptome atlas reveals seasonal changes in physiology and diseases. Nature Communications 16, 3906 (2025).
  • Masakazu Nambo, Taeko Nishiwaki-Ohkawa, Akihiro Ito, Zachary T. Ariki, Yuka Ito, Yuuki Kato, Muhammad Yar, Jacky C. -H. Yim, Emily Kim, Elizabeth Sharkey, Keiko Kano, Emi Mishiro-Sato, Kosuke Okimura, Michiyo Maruyama, Wataru Ota, Yuko Furukawa, Tomoya Nakayama, Misato Kobayashi, Fumihiko Horio, Ayato Sato, Cathleen M. Crudden, Takashi Yoshimura. Synthesis and preclinical testing of a selective beta-subtype agonist of thyroid hormone receptor ZTA-261. Commun Med 4, 152 (2024).
  • Tomoya Nakayama, Miki Tanikawa, Yuki Okushi, Thoma Itoh, Tsuyoshi Shimmura, Michiyo Maruyama, Taiki Yamaguchi, Akiko Matsumiya, Ai Shinomiya, Ying-Jey Guh, Junfeng Chen, Kiyoshi Naruse, Hiroshi Kudoh, Yohei Kondo, Honda Naoki, Kazuhiro Aoki, Atsushi J. Nagano, Takashi Yoshimura. A transcriptional program underlying the circannual rhythms of gonadal development in medaka. Proceedings of the National Academy of Sciences of the United States of America 120(52), e2313514120 (2023).
  • Junfeng Chen, Yuma Katada, Kousuke Okimura, Taiki Yamaguchi, Ying-Jey Guh, Tomoya Nakayama, Michiyo Maruyama, Yuko Furukawa, Yusuke Nakane, Naoyuki Yamamoto, Yoshikatsu Sato, Hironori Ando, Asako Sugimura, Kazufumi Tabata, Ayato Sato, Takashi Yoshimura. Prostaglandin E2 synchronizes lunar-regulated beach-spawning in grass puffers. Current Biology 32, 1-9 (2022).
  • Apirada Padlom, Daisuke Ono, Rio Hamashima, Yuko Furukawa, Takashi Yoshimura, Taeko Nishiwaki-Ohkawa. Level of constitutively expressed BMAL1 affects the robustness of circadian oscillations. Sci Rep 12, 19519 (2022).
  • Nakayama T, Okimura K, Shen J, Guh YJ, Tamai TK, Shimada A, Minou S, Okushi Y, Shimmura T, Furukawa Y, Kadofusa N, Sato A, Nishimura T, Tanaka M, Nakayama K, Shiina N, Yamamoto N, Loudon AS, Nishiwaki-Ohkawa T, Shinomiya A, Nabeshima T, Nakane Y, Yoshimura T.
    Seasonal changes in NRF2 antioxidant pathway regulates winter depression-like behavior.
    Proceedings of the National Academy of Sciences of the United States of America  [Epub ahead of print] (2020).
  • Nakayama T, Shimmura T, Shinomiya A, Okimura K, Takehana Y, Furukawa Y, Shimo T, Senga T, Nakatsukasa M, Nishimura T, Tanaka M, Okubo K, Kamei Y, Naruse K, Yoshimura T.
    Seasonal regulation of the lncRNA LDAIR modulates self-protective behaviours during the breeding season.
    Nature Ecology & Evolution [Epub ahead of print] (2019).
    Featured in BEHIND THE PAPER
  • Tamai TK, Nakane Y, Ota W, Kobayashi A, Ishiguro M, Kadofusa N, Ikegami K, Yagita K, Shigeyoshi Y, Sudo M, Nishiwaki-Ohkawa T, Sato A, Yoshimura T.
    Identification of circadian clock modulators from existing drugs.
    EMBO Molecular Medicine e8724 (2018).
  • Shimmura T, Nakayama T, Shinomiya A, Fukamachi S, Yasugi M, Watanabe E, Shimo T, Senga T, Nishimura T, Tanaka M, Kamei Y, Naruse K, Yoshimura T.
    Dynamic plasticity in phototransduction regulates seasonal changes in color perception.
    Nature Communications 8, 412 (2017).
  • Maeda R, Shimo T, Nakane Y, Nakao N, Yoshimura T.
    Ontogeny of the Saccus Vasculosus, a Seasonal Sensor in Fish.
    Endocrinology 156, 4238-43 (2015)
  • Shimmura T, Ohashi S, Yoshimura T.
    The highest-ranking rooster has priority to announce the break of dawn.
    Scientific Reports 5, 11683 (2015)
  • Oshima T, Yamanaka I, Kumar A, Yamaguchi J, Nishiwaki-Ohkawa T, Muto K, Kawamura R, Hirota T, Yagita K, Irle S, Kay SA, Yoshimura T, Itami K.
    C-H activation generates period-shortening molecules that target cryptochrome in the mammalian circadian clock.
    Angewandte Chemie International Edition in English 54, 7193-7 (2015)
  • Ikegami K, Liao XH, Hoshino Y, Ono H, Ota W, Ito Y, Nishiwaki-Ohkawa T, Sato C, Kitajima K, Iigo M, Shigeyoshi Y, Yamada M, Murata Y, Refetoff S, Yoshimura T.
    Tissue-specific post-translational modification allows functional targeting of thyrotropin
    Cell Reports 9, 1-9 (2014)
    Selected for cover picture
  • Nakane Y, Shimmura T, Abe H, Yoshimura T.
    Intrinsic photosensitivity of deep brain photoreceptor.
    Current Biology 24, R596-R597 (2014)
    Featured in Current Biology Dispatch and selected for cover picture
  • Nakane Y, Ikegami K, Iigo M, Ono H, Takeda K, Takahashi D, Uesaka M, Kimijima M, Hashimoto R, Arai N, Suga T, Kosuge K, Abe T, Maeda R, Senga T, Amiya N, Azuma T,
    Amano M, Abe H, Yamamoto N, Yoshimura T.
    The saccus vasculosus of fish is a sensor of seasonal changes in day length.
    Nature Communications 4, 2108 (2013)
    Featured article in Nature Communications, Nature Japan「注目のハイライト」
  • Shimmura T, Yoshimura T.
    Circadian clock determines the timing of rooster crowing.
    Current Biology 23, R231-R233 (2013)
    Selected for cover picture
  • Nakane Y, Ikegami K, Ono H, Yamamoto N, Yoshida S, Hirunagi K, Ebihara S, Kubo Y, Yoshimura T.
    A mammalian neural tissue opsin (Opsin 5) is a deep brain photoreceptor in birds.
    Proceedings of the National Academy of Sciences of the United States of America 107, 15264-15268 (2010)
    SCIENCE (Aug 20, 2010) Editor’s Choice
  • Tomida S, Mamiya T, Sakamaki H, Miura M, Aosaki T, Masuda M, Niwa M, Kameyama T, Kobayashi J, Iwaki Y, Imai S, Ishikawa A, Abe K, Yoshimura T, Nabeshima T, Ebihara S.
    Identification of Usp46, encoding a ubiquitin specific peptidase, as a quantitative trait gene regulating mouse immobile behavior in the tail suspension test and forced swimming test.
    Nature Genetics 41, 688-695 (2009)
  • Yasuo S, Yoshimura T, Ebihara S, Korf HW.
    Melatonin transmits photoperiodic signals through the MT1 melatonin receptor.
    Journal of Neuroscience 29, 2885-2889 (2009)
  • Ono H, Hoshino Y, Yasuo S, Watanabe M, Nakane Y, Murai A, Ebihara S, Korf HW, Yoshimura T.
    Involvement of thyrotropin in photoperiodic signal transduction in mice.
    Proceedings of the National Academy of Sciences of the United States of America 105, 18238-18242 (2008)
  • Nishiwaki T, Satomi Y, Kitayama Y, Terauchi K, Kiyohara R, Takao T, Kondo T.
    A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.
    EMBO J 26, 4029-4037 (2007)
  • Nakao N, Ono H, Yamamura T, Anraku T, Takagi T, Higashi K, Yasuo S, Katou Y, Kageyama S, Uno Y, Kasukawa T, Iigo M, Sharp PJ, Iwasawa A, Suzuki Y, Sugano S, Niimi T, Mizutani M, Namikawa T, Ebihara S, Ueda HR, Yoshimura T.
    Thyrotrophin in the pars tuberalis triggers photoperiodic response.
    Nature 452, 317-322 (2008)
    News & ViewsFaculty of 1000 Biology “Exceptional”
  • Nishiwaki T, Satomi Y, Nakajima M, Lee C, Kiyohara R, Kageyama H, Kitayama Y, Temamoto M, Yamaguchi A, Hijikata A, Go M, Iwasaki H, Takao T, Kondo T.
    Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942.
    Proceedings of the National Academy of Sciences of the United States of America 101, 13927-13932 (2004)
  • Yoshimura T, Yasuo S, Watanabe M, Iigo M, Yamamura T, Hirunagi K, Ebihara S.
    Light-induced hormone conversion of T4 to T3 regulates photoperiodic response of gonads in birds.
    Nature 426, 178-181 (2003)
PAGE TOP